When I installed an fcr39 off a yz onto my 03 fe400 I just looked up what a ktm400 was using and installed that.
With my 06 450 I installed a fmf jet kit for a ktm 450.
Both worked fine.
As yours is a much older engine probably the closest too it is going to be the 2000 520 ktm which ran a 39 fcr, so maybe start there and just fine tune it if it needs it.